RAMBIN HOWTO

Ram Samudrala (ram@compbio.washington.edu)

1. Introduction

2. Installation

• 2.1 System requirements
• 2.2 Setting up the distribution
• 2.3 Using the default setup
• 2.4 Changing the defaults and recompiling
• 2.5 Using RAMP
• 2.6 Using a login shell other than tcsh

3. General issues

• 3.1 Command line interface
• 3.2 Directory structure
• 3.3 Environment variables

4. Programs

• 4.1 Tools
• 4.2 Miscellaneous programs

5. Usage guidelines

6. Bibliography