chemaxon.checkers
Class PseudoAtomChecker

java.lang.Object
  chemaxon.checkers.AbstractStructureChecker
      chemaxon.checkers.ComponentChecker<MolAtom>
          chemaxon.checkers.AtomChecker
              chemaxon.checkers.PseudoAtomChecker

All Implemented Interfaces:

StructureChecker, chemaxon.license.Licensable, java.beans.PropertyChangeListener, java.lang.Cloneable, java.util.EventListener

public class PseudoAtomChecker
extends AtomChecker

A descendant of AtomChecker detecting pseudo atoms.

Since:

Marvin 5.3

Version:

5.7

Author:

Attila Szabo

See Also:

MolAtom.isPseudo()

Field Summary

Fields inherited from class chemaxon.checkers.AbstractStructureChecker

errorType, propertyChangeSupport

Fields inherited from interface chemaxon.checkers.StructureChecker

PROPERTY_KEY_VALID

Constructor Summary

PseudoAtomChecker()
Default constructor

Method Summary

protected boolean	check(Molecule molecule, MolAtom atom) Checks if the component with index i has problem
protected StructureCheckerResult	createResult(Molecule molecule, java.util.List<MolAtom> atoms) Creates a StructureCheckerResult from a List containing the components.

Methods inherited from class chemaxon.checkers.AtomChecker

getComponent, getComponentCount

Methods inherited from class chemaxon.checkers.ComponentChecker

check1, initialize

Methods inherited from class chemaxon.checkers.AbstractStructureChecker

addPropertyChangeListener, addPropertyChangeListener, check, clone, cloneItem, convertResult, equals, expandMolecule, getDescription, getDescriptor, getEditorClassName, getErrorCode, getErrorDescription, getErrorType, getHelpText, getIcon, getLocalMenuName, getName, hashCode, isAvailable, isLicensed, isValid, propertyChange, removePropertyChangeListener, removePropertyChangeListener, setDescription, setHelpText, setIcon, setLicenseEnvironment, setLocalMenuName, setMoreErrorMessage, setName, setNoErrorMessage, setOneErrorMessage, toString

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

PseudoAtomChecker

public PseudoAtomChecker()

Default constructor

Method Detail

check

protected boolean check(Molecule molecule,
                        MolAtom atom)

Description copied from class: ComponentChecker

Checks if the component with index i has problem

Specified by:

check in class ComponentChecker<MolAtom>

Parameters:

molecule - is a Molecule instance

atom - the current component to check

Returns:

true if the component has problem, false otherwise

createResult

protected StructureCheckerResult createResult(Molecule molecule,
                                              java.util.List<MolAtom> atoms)

Description copied from class: ComponentChecker

Creates a StructureCheckerResult from a List containing the components.

Overrides:

createResult in class AtomChecker

Parameters:

molecule - is a Molecule instance

atoms - is an instance of List containing the problematic components

Returns:

a StructureCheckerResult containing all problematic component indices