chemaxon.marvin.util
Class MoleculeUtil

java.lang.Object
  chemaxon.marvin.util.MoleculeUtil

Deprecated. as of Marvin 5.11.1, replaced by chemaxon.core.util.MoleculeUtil

public class MoleculeUtil
extends java.lang.Object

Molecule editing utility methods.

Since:

Marvin 5.3, 09/16/2009

Version:

5.3, 09/16/2009

Author:

Erika Biro

Constructor Summary

MoleculeUtil()
Deprecated.

Method Summary

static void	arrangeCrossingBonds(MolBond bond, Molecule mol, boolean front) Deprecated. as of Marvin 5.11.1 use MoleculeGraph#setBond(int, MolBond)
static MolBond[]	getCrossingBonds(MolBond[] b, DPoint3 e1, DPoint3 e2) Deprecated. as of Marvin 5.11.1

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MoleculeUtil

public MoleculeUtil()

Deprecated.

Method Detail

arrangeCrossingBonds

public static void arrangeCrossingBonds(MolBond bond,
                                        Molecule mol,
                                        boolean front)

Deprecated. as of Marvin 5.11.1 use MoleculeGraph#setBond(int, MolBond)

Arranges a bond of the molecule: brings to the first or last place according to indices.

Parameters:

bond - the bond to move

mol - the molecule that contains the bond

front - Where to move the bond. If true, then the bond is moved to the first place, otherwise to the last place.

getCrossingBonds

public static MolBond[] getCrossingBonds(MolBond[] b,
                                         DPoint3 e1,
                                         DPoint3 e2)

Deprecated. as of Marvin 5.11.1

Searches for the bonds, that crosses a segment.

Parameters:

b - array of bonds to get the crossing bonds from

e1 - first endpoint of the segment

e2 - second endpoint of the segment

Returns:

array of bonds, that crosses the segment