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Interface Summary | |
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CEdge | Deprecated. as of Marvin 5.3, please use MolBond instead |
CGraph | Deprecated. as of Marvin 5.3, please use MoleculeGraph instead |
CNode | Deprecated. as of Marvin 5.3, please use MolAtom instead |
HybridizationStateConsts | Hybridization state constants. |
Incomplecule | Ancestor of molecule classes and interfaces. |
MTransformable | Interface for 3D transformable classes. |
Smolecule | Array-based abstract molecule class. |
StereoConstants | Constants for atom parity and double bond stereo. |
WSmolecule | Writable abstract molecule class. |
Class Summary | |
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CTransform3D | 3D transformation matrix. |
DPoint3 | Point in three dimensional space. |
MDocument | Marvin document. |
MDocument.CheckerMark | Provides informations for Structure Checker higlight |
MObject | Paintable object. |
MolAtom | Atom object and the properties of the elements. |
MolBond | Chemical bond. |
Molecule | Molecule class. |
MoleculeGraph | A graph consisting of MolAtom nodes and MolBond edges. |
MPoint | Point object. |
MProp | Property base class. |
MPropertyContainer | Property container. |
MSelectionDocument | Selection document. |
PeriodicSystem | Periodic System of the Elements. |
QueryBond | Chemical bond. |
RgMolecule | A molecule or reaction containing R-groups. |
RxnMolecule | Reaction. |
SelectionMolecule | A selection object which can contain atoms and bonds without real parent relationship (the real parent of atoms and bonds is another MoleculeGraph ancestor). |
Sgroup | S-group. |
Enum Summary | |
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MoleculeGraph.ValenceCheckState | Possible states of valence check: off: no check for all atoms ambiguousAromaticAtomsIgnored: no check for aromatic Nitrogen-like atoms atoms full: all atoms of the molecule are checked |
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